Same problem here (AMD64 3200+ Venice, ASRock K8-Combo-Z). Couldn't even install (10.4.1) until I put both the DVD drive and the HDD I was installing to on the primary cable (still waiting for root device).
Sure enough, after installation, my DVD drive (now back on the secondary port) is not detected. Haven't tried putting it back on the primary controller yet. Will try 10.4.3 shortly. Hopefully I'll have more luck with that

Edit: Now running 10.4.3 (8F1111A), and no better luck with the IDE interface. Having read the wiki a little more thoroughly, ULi chipsets, which my MB uses, seems like a no go. Might have a look into bastardising a driver to work with it. Not familiar with IOKit though, so it may take some time